domingo, novembro 09, 2008

banco de dados de organismos ,genoma,analises filogenéticas e muito mais (:

Bancos e análises filogenéticas

TreeBASE - Relational database of phylogenetic information

The Tree of life - Collection of WWW pages on phylogeny and biodiversity of organisms

RDP - Ribosomal db Project

ICB - Identification and Classification of Bacteria

Phylogeny Programs - Here are some 206 of the phylogeny packages, and 25 free servers. It is an attempt to be completely comprehensive.

EMBL - European Molecular Biology Laboratory

OMIM - Online Mendelian Inheritance in Man. This database is a catalog of human genes and genetic disorders developed for the World Wide Web by NCBI, the National Center for Biotechnology Information.

banco de dados Organismos e Genoma

All the virology on the WWW - links to virology WWW servers by David M. Sander
ICTVdB - Universal virus taxonomy database
AVIS - Animal Virus Information System
Plants Viruses Online - Information on plant viruses
HIV - HIV and related species database
HPV - HPV (papillomaviruses) database
Influenza sequence database
Picornavirus - Picornavirus home page and access to database
GOLD - Genomes On-line database
DOGS - Database of genome sizes
A.pernix - Aeropyrum pernix K1 genome database
AfDB - TIGR Archaeoglobus fulgidus genome database
MjDB - TIGR Methanococcus jannaschii genome database
MjFdb - Methanococcus jannaschii functions database
M.thermoautotrophicum - Methanobacterium thermoautotrophicum genome database
OT3 - Pyrococcus horikoshii OT3 database
P.abyssi - Pyrococcus abyssi genome project and database
SGP - Sulfolobus acidocaldarius genome project

WDCM - World Data Center for Microorganisms
List of Bacterial Names with Standing in Nomenclature
MDB - TIGR Microbial database
HOBACGEN - Homologous Bacterial Genes
Comparison of the transport capabilities of bacterial genomes - from Ian Paulsen
EcoWeb / EcoGene - Very comprehensive E.coli database
ECDC - E.coli database collection
EcoCyc - Encyclopedia of E.coli genes and metabolism
GenProtEC - E.coli genome and proteome database
Colibri - E.coli genome database from Pasteur Insitute
ECGC - E.coli Genome Center at Wisconsin University
DDBJ E.coli - E.coli home page at DDBJ
B.subtilis SWISS-PROT list - Links to B.subtilis WWW sites and to SWISS-PROT entries
SubtiList - Bacillus subtilis genomic database
NRSub - Bacillus subtilis non-redundant database
Micado - Microbial advanced database (B.subtilis + E.coli)
BSORF - Japanese server on B.subtilis
A.actinomycetemcomitans - Actinobacillus actinomycetemcomitans strain HK1651 genome project
B.stearothermophilus - Bacillus stearothermophilus strain 10 genome project
B.pertussis - Bordetella pertussis genome WWW site
BbDB - TIGR Borrelia burgdorferi genome database
Chlamydia - Chlamydia pneumoniae and trachomatis
C.acetobutylicum - GTC Clostridium acetobutylicum data
C.jejuni - Campylobacter jejuni genome WWW site
DrDB - TIGR Deinococcus radiodurans genome database
F.tularensis - Francisella tularensis genome WWW site
HiDB - TIGR H.influenzae genome database
HIDC - H.influenzae database collection
HpDB - TIGR Helicobacter pylori strain 26695 genome database
H.pylori J99 - Astra Helicobacter pylori strain J99 genome database
MycDB - Mycobacterium database
M.leprae - GTC Mycobacterium leprae data
M.tuberculosis at GTC - GTC Mycobacterium tuberculosis data
TubercuList - Mycobacterium tuberculosis strain H37Rv genome database
MtDB - TIGR Mycobacterium tuberculosis strain Oshkosh genome database
M.tuberculosis at Sanger - Sanger Centre M.tuberculosis H37Rv genome project
MgDB - TIGR Mycoplasma genitalium genome database
M.pneumoniae - Mycoplasma pneumoniae genome project
N.gonorrhoeae - Neisseria gonorrhoeae strain FA 1090 genome project
P.aeruginosa - Pseudomonas aeruginosa genome project
Rhizobium pNGR234a analysis
RsGDB - Rhodobacter sphaeroides genome database
R.prowazekii - Rickettsia prowazekii strain Madrid E genome project
S.meliloti - Sinorhizobium meliloti genome project
S.aureus - Staphylococcus aureus strain NCTC 8325 genome project
S.mutans - Streptococcus mutans strain UAB159 genome project
S.pyogenes - Streptococcus pyogenes strain M1 genome project
CyanoBase - Synechocystis PCC 6803 database
TmDB - TIGR Thermotoga maritima genome database
TpDB - TIGR Treponema pallidum genome database
X.fastidosa - Xylella fastidosa genome WWW site
Y.pestis - Yersinia pestis genome WWW site


>> Saccharomyces cerevisiae
SGD - Saccharomyces Genome Database
YPD - Yeast Protein Database
MitBASE-Pilot - Database of S.cerevisiae nuclear genes involved in mitochondrial biogenesis
Yeast snoRNA - Yeast small nucleolar RNAs database
YTPdb - Yeast Transport Protein database>> S. Pombe
S.pombe NIH - Fission yeast (S.pombe) server at the NIH

>> Candida albicans

Candida albicans - Candida albicans server at the Univ. of MinnesotaFungos
Aspergillus web site
NGP - Neurospora genome project
Phycomyces Web site - Resource site for scientists working on Phycomyces
FGSC - Fungal Genetics Stock Center
FGR - Fungal Genome Resource

NAL - AGIS - Access to many plant genome databases at the National Agricultural Library
Demeter’s genomes - Access to many plant genome databases at the USDA-ARS
Mendel - Plant gene nomenclature database from CPGN
TAIR - The Arabidopsis Information Resource
TIGR AtGI - TIGR Arabidopsis thaliana Gene Index
BeanGenes - Beans genome database
BeanRef - Beans genome database and other resources
ChlamyDB - Chlamydomonas reinhardtii genome database
CottonDB - Cotton genome database
MaizeDb - Maize genome database
INRA Maize - INRA Maize genome database
Piusm sativum (pea) web site
RGP - Rice Genome Research Program
TIGR GmGI - TIGR Soybean Gene Index
TIGR OsGI - TIGR Rice Gene Index
Snapdragon (A.majus) web site
SorghumDB - Sorghum genome database
SoyBase - Soybean genome database
SoyBase metabolic db - Metabolic subset of the soybean genome database
TIGR LeGI - TIGR Tomato Gene Index
Dendrome - Forest trees genome database

C.elegans WWW server - at University of Texas Southwestern
ACeDb - Caenorhabditis elegans database
C.elegans Mitochondrial Directory - Data on C.elegans genes for mitochondrial proteins
C.elegans EST - C.elegans EST database from Japan (Yuji Kohara’s group)
C.elegans SWISS-PROT list - Links to C.elegans SWISS-PROT entries
WormPep - C.elegans proteins database
WormPD - C.elegans protein database
DictyDb - Dictyostelium discoideum database
Dicty_cDB - Dictyostelium discoideum cDNA project
Dictyostelium discoideum genome project
Cone shells Web site
LGN - Leishmania Genome Network
MAD - Malaria Antigen database
Malaria - WHO - Malaria database
P.falciparum Sanger - P.falciparum genome project at Sanger
P.falciparum - Plasmodium falciparum Gene Sequence Tag project
Trypanosoma brucei genome project
kDNA - Kinetoplast Minicircle Sequence database

Drosophila SWISS-PROT list - Links to Drosophila SWISS-PROT entries
FlyBase - Drosophila genetic and molecular database
FlyView - Drosophila image database
GIFTS - Gene Interactions in the Fly Trans-World Server
FlyNets - database of molecular interactions in Drosophila melanogaster
SOS-DGBD - database of Drosophila DNA sequences annotated with regulatory binding sites
Mosquito Genomics

Mitocondria e Cloroplasto
GOBASE - Organelle Genome Database
MitoDat - Mendelian Inheritance and the Mitochondrion database
MITOMAP - Human mitochondrial genome database
MmtDB - Metazoa mitochondrial DNA variants database
MitBASE - Integrated mitochondrial DNA database
MitBASE-Pilot - Db of S.cerevisiae nuclear genes involved in mitochondrial biogenesis
HvrBase - Primates mtDNA control region sequences compilation

Bancos de Proteínas

- SWISS-PROT annotated protein sequence database

PIR - Protein Information Resource

PDB - Protein Data Bank

Proteomics SURF

PROSITE - PROSITE dictionary of protein sites and patterns

InterPro - Integrated Resources of Proteins Domains and Functional Sites

BLOCKS - BLOCKS database

DOMO - Protein domain database

Pfam - Protein families db (HMM derived)

PRINTS - Protein Motif fingerprint database

ProDom - Protein domain database

PROTOMAP - An automatic hierarchical classification of SWISS-PROT proteins

SBASE - SBASE domain database

Kabat - Kabat db of protein of immunological interest

PMD - Protein Mutant database

DIP - Db of Interacting Proteins

INTERACT - Protein-Protein interaction database


- Complex Carbohydrate Structure Database

TGN - The Glycoscience Network

CARBHYD - Carbohydrate information WWW sites

Monosacharide browser - Space filling Fischer projection for monosaccharides

Bancos de dados

Genbank - GenBank Nucleotide Sequence database (NCBI)
EMBL - EMBL Nucleotide sequence database
GOLD - Genome OnLine Database
DDBJ - DNA Data Bank of Japan
GSDB - Genome Sequence database
dbEST - dbEST (Expressed Sequence Tags) database (NCBI)
dbSTS - dbSTS (Sequence Tagged Sites) database (NCBI)
NDB - Nucleic Acid Databank (3D structures)
BNASDB - Nucleic acid structure database from University of Pune
AsDb - Aberrant Splicing database
ACUTS - Ancient conserved untranslated DNA sequences database
Codon Usage Database
EPD - Eukaryotic Promoter database
HOVERGEN - Homologous Vertebrate Genes database
IMGT - ImMunoGeneTics database
ISIS - Intron Sequence and Information System
RDP - Ribosomal database Project
gRNAs - Guide RNA database
PLACE - Plant cis-acting regulatory DNA elements database
PlantCARE - Plant cis-acting regulatory DNA elements database
sRNA db - Small RNA database
ssu rRNA - Small ribosomal subunit database
lsu rRNA - Large ribosomal subunit database
5S rRNA - 5S ribosomal RNA database
tmRNA Website
tmRDB - tmRNA database
tRNA - tRNA compilation from the University of Bayreuth
uRNADB - uRNA database
RNA editing - RNA editing site
RNAmod db - RNA modification database
dbSNP - Single Nucleotide Polymorphisms database
SOS-DGBD - Drosophila DNA sequences annotated with regulatory binding sites
TelDB - Multimedia Telomere Resource
TRADAT - TRAnscription Databases and Analysis Tools
Viroids compilation - Small circular RNAs db (viroid and viroid-like) MPDB - Molecular probe database
OPD - Oligonucleotide probe database

LOL mas que post hein?

vamos apresentar aqui pra vocês o que ha de melhor em conversores online e calculadores ,para todo tipo de trabalho,selecionado por mim em pesquisas atuais ,precisa estamos ae!qualquer duvida


.: Conversion Tools

Micrograms/Milliliters of Oligos to Picomoles/Microliters
Picomoles/Microliters of Oligos to Micrograms/Milliliters
Micrograms of dsDNA to Picomoles
Picomoles of dsDNA to Micrograms and Nanograms
O.D.260 Units of Nucleic Acid to Concentration
Protein Coding Capacity of DNA
Protein Molar Conversions
Unit Conversion Calculator

.: Laboratory Calculators

Buffer Calculator
Centrifugation Calculator
Radioactive Half-Life
Cell Dilution Factor
Protein Extinction Coefficient Calculator
Transformation Efficiency Calculator

ufa!enfim espero que tenham gostado e COMENTEM por favor... Não imagina o quanto da trabalho busca isso e trazer aqui tudo organizado pra voces almenos reconheça os esforços de quem esta disposto a ajudar e manter informação de graça a todos! Abraços e felicidades!Dr O.liverkall

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